On a Windows system, I have used the @filename.pml command and that works. I believe I've done what you say on linux, but let me explain what I do. First, I open a blank program through commands in the terminal. This can only be done in the pymol directory. Once that is open, I am able to open pdb files or .pse files by using the File-->Open selections and choose my file from any directory. When I try this for my .pml file, the pymol command window says that it loaded, but nothing shows up in the graphics window. If I try to type @filename.pml in the command line, it gives an error saying it doesn't recognize the name. -- Hally Shaffer <>< Graduate Student Georgia Institute of Technology School of Chemistry and Biochemistry gth8...@mail.gatech.edu
Quoting Buz Barstow <b...@mac.com>: > Hi Hally, > > Sometimes if you type @ followed by the name of the pml file, you can > get more luck than if you simply type run followed by the name of the > pml file. I don't know why this works, but it's been working a lot for > me recently. > > Good luck! and all the best, > > --Buz > > > On Jan 23, 2008, at 1:12 PM, Hally Shaffer wrote: > > > I installed pymol onto a linux system. I can open the program, open > > the pdb > > file, and open a .pse file, but I cannot open the .pml file which > > contains the > > manipulations that I've already made. Any suggestions? > > > > -- > > Hally Shaffer > > <>< Graduate Student > > Georgia Institute of Technology > > School of Chemistry and Biochemistry > > gth8...@mail.gatech.edu > > > > > > > > > > > > ------------------------------------------------------------------------- > > This SF.net email is sponsored by: Microsoft > > Defy all challenges. Microsoft(R) Visual Studio 2008. > > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > >
