Hi Moshe, No it isn't. PyMOL is a molecular viewer/graphics engine, not a modeling package. However, it's not too hard to do using your favourite MD package. With the definition of a bond and some energy minimization you'd get close. If it's for displaying purposes only, that might even be enough.
Cheers, Tsjerk On Fri, Feb 15, 2008 at 1:17 AM, <goldm...@fh.huji.ac.il> wrote: > > Hello. > > I am new to PyMOL. > Very easily I succeeded to build a linear peptide, given its sequence. > I want to build a cyclic peptide for the same sequence, connecting the > C-terminus with the N-terminus. I know that the bond that is created > that way is too long - it should be, also, some > (automatic/algorithmic) way to rearrange the cyclic structure in order > to have an acceptable bond length. > Is this possible to do with PyMOL? > > Thanks for your help. > -- Moshe Goldstein > > > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
