Hi Pymol users,

I want to display the polar interactions between some ligands and a receptor, but I 'm not quite sure if Pymol can do that for F, Cl or S atoms. There's a tutorial on the wiki that explains how to set the cutoff distance but that refers only to O and N atoms:

http://www.pymolwiki.org/index.php/Displaying_Biochemical_Properties#Hydrogen_bonds_and_Polar_Contacts

I was wondering if I can do that by modifying those code snippets. I would greatly appreciate any help. Also if someone knows the distance H-bond donor and acceptor for F and Cl atoms please tell me. I know only the respective distance for S which is 4 A maximum.

thanks,
Tom


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