Hi Pymol users,
I want to display the polar interactions between some ligands and a
receptor, but I 'm not quite sure if Pymol can do that for F, Cl or S
atoms. There's a tutorial on the wiki that explains how to set the
cutoff distance but that refers only to O and N atoms:
http://www.pymolwiki.org/index.php/Displaying_Biochemical_Properties#Hydrogen_bonds_and_Polar_Contacts
I was wondering if I can do that by modifying those code snippets. I
would greatly appreciate any help. Also if someone knows the distance
H-bond donor and acceptor for F and Cl atoms please tell me. I know
only the respective distance for S which is 4 A maximum.
thanks,
Tom