Bart, The way to do this is to apply molecular transformations first and then matrix_copy (formerly matrix_transfer) from the transformed molecule object to the map object before issuing the isomesh command.
load mol1.pdb load mol2.pdb load map1.ccp4 load map2.ccp4 align mol2////CA, mol1////CA matrix_copy mol2, map2 isomesh mesh1, map1 isomesh mesh2, map2 etc. Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:[email protected] -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of [email protected] Sent: Monday, July 28, 2008 7:30 AM To: [email protected] Subject: [PyMOL] move density Dear all, is it possible by now to apply a rotation matrix to a electron density map object? If I am not mistaken, there was a way to output rotation matrix of 'align' (or 'super' and so on), but rotating an isomesh object might be the crucial point. Any hints or future annoucements (beta?) are very welcome. Best regards, Bart ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ PyMOL-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/pymol-users
