Hmmm.
I'm probably over-complicating matters, but:
def before_load():
cmd.delete("all")
def after_load():
cmd.as("cartoon")
cmd.hide("nonbonded")
def wrapped_load(filename):
before_load()
cmd.load(filename)
after_load()
cmd.extend("wrapped_load", wrapped_load)
gilleain
On Wed, Oct 29, 2008 at 7:26 PM, Nathaniel Echols
<nathaniel.ech...@gmail.com> wrote:
> On Wed, Oct 29, 2008 at 11:39 AM, Thomas S. Leyh, Ph. D. <l...@aecom.yu.edu>
> wrote:
>>
>> Every once in a while, I try to show a metal ion as a tranparent
>> sphere and inevetiably get stuck trying to make the tiny cartesian
>> coordinate system that appears at the center of the sphere disappear so it
>> doesn't "show through". Suggestions?
>
> I think you want "hide nonbonded".
> I have a related question: is there a way (or could there be) to control the
> default appearance of molecules upon loading? Personally, when I use PyMOL
> I almost always want to look at cartoons, without nonbonded atoms.
> Something as simple as a few new settings that I could throw in ~/.pymolrc
> would be fine.
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