Pankaj,

 

distance name, selection, selection, mode=2

 

For example:

 

load $TUT/1hpv.pdb

 

distance my_dist, A/98/, B/2/, mode=2

 

Cheers,

Warren

 

 

________________________________

From: Pankaj Barah [mailto:[email protected]] 
Sent: Sunday, March 08, 2009 11:43 PM
To: [email protected]
Subject: [PyMOL] Showing hydrogen bonds

 

Hi,

How can I visualize and calculate the distance of  hydrogen bonds
between two residues in PyMol?

-------
Pankaj Barah
Mathematical modelling & Computational Biology Group
Centre for Cellular & Molecular Biology
Uppal Road, Hyderabad 500 007, AP, India





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