Paul,
Thank you for that bug report! The command:
extract waters, solvent
solves the problem by pulling solvent atoms out into a separate object
(named "waters").
Cheers,
Warren
________________________________
From: Paul Mcewan [mailto:[email protected]]
Sent: Friday, March 13, 2009 5:01 AM
To: [email protected]
Subject: [PyMOL] side chain helper
Dear all,
I'm currently using PyMol v1.2b2 and think I may have found a
little glitch. While preparing a figure with waters and stick
representations on a cartoon backbone with the sidechain helper switched
on the sphere representation of the waters disappear leaving only
nonbonded crosses. If there is any trick (other than blending the images
in photoshop) to get around this could you let me know.
Thanks,
Paul..
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Dr. Paul A. McEwan
Office B55
Centre for Biomolecular Science
University of Nottingham
Nottingham
NG7 2RD
UK
Tel: 0115 8232010 (office)
Tel: 0115 8232011 (lab)
<https://owa.nottingham.ac.uk/exchweb/bin/redir.asp?URL=http://www.notti
ngham.ac.uk/pharmacy/research/medicinal-chemistry-struct>
http://www.nottingham.ac.uk/pharmacy/research/medicinal-chemistry-struct
<http://www.nottingham.ac.uk/pharmacy/research/medicinal-chemistry-struc
tural-biology/structbio.php> ural-biology/structbio.php
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