That would require execution of a python program within a specific
scene, which is not supported as far as I know. Scenes are intended to
be static representations of display states, for lack of a better word.
You would need to manually run the fade script before transitioning the
scene. Not sure if this is what you want. Looks as if you may be better
off plunging into movies if you really need the effect.
Mark Lutz, David Asher , Learning Python, o'Reilly .... Great book if
you want to dive into python.
Cheers,
Carsten
From: Dirk Kostrewa [mailto:kostr...@genzentrum.lmu.de]
Sent: Tuesday, September 01, 2009 9:56 AM
To: PyMOLBB
Subject: Re: [PyMOL] Smooth fading of surface in movie?
Dear Carsten,
yes, thanks. However, for a smooth fading, that would require a lot of
scenes. Is there a simple python loop, that would create scenes with
smooth transparency fading-in from 0 to 1 and that I could use in my
pymol-scripts? Unfortunately, I'm not familiar with python, yet ...
Best regards,
Dirk.
Am 01.09.2009 um 15:39 schrieb Schubert, Carsten [PRDUS]:
Dirk,
you could try playing around with different transparency settings in
subsequent scenes to emulate the effect.
HTH
Carsten
From: Dirk Kostrewa [mailto:kostr...@genzentrum.lmu.de]
Sent: Tuesday, September 01, 2009 8:57 AM
To: PyMOLBB
Subject: [PyMOL] Smooth fading of surface in movie?
Dear Warren,
using PyMOL without any additional "plug-ins", like slerpy or eMovie, is
it possible to fade in or out a surface of, say, a ligand, between
scenes?
Best regards,
Dirk.
*******************************************************
Dirk Kostrewa
Gene Center, A 5.07
Ludwig-Maximilians-University
Feodor-Lynen-Str. 25
81377 Munich
Germany
Phone: +49-89-2180-76845
Fax: +49-89-2180-76999
E-mail: kostr...@genzentrum.lmu.de
<mailto:kostr...@lmb.uni-muenchen.de>
WWW: www.genzentrum.lmu.de
<mailto:kostr...@lmb.uni-muenchen.de>
*******************************************************
*******************************************************
Dirk Kostrewa
Gene Center, A 5.07
Ludwig-Maximilians-University
Feodor-Lynen-Str. 25
81377 Munich
Germany
Phone: +49-89-2180-76845
Fax: +49-89-2180-76999
E-mail: kostr...@genzentrum.lmu.de
<mailto:kostr...@lmb.uni-muenchen.de>
WWW: www.genzentrum.lmu.de
<mailto:kostr...@lmb.uni-muenchen.de>
*******************************************************
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