If you would like to use a server for protein-protein docking, you can check out the nice list on the wikipedia page for CAPRI.
http://en.wikipedia.org/wiki/Critical_Assessment_of_PRediction_of_Interactions#List_of_predictions_servers_participating_in_CAPRI If you're looking for actual pieces of software or more manual approaches, you can look at the recent series of posts on the Rosetta Design Group's blog that summarizes many of the talks from the CAPRI assessment meeting in December. http://rosettadesigngroup.com/blog/tag/capri/ Aslo, http://dx.doi.org/10.1016/j.sbi.2009.02.008 has a nice summary of the various approaches. -David On Wed, Feb 24, 2010 at 7:36 AM, mohan raj <mohanrajdec2...@gmail.com> wrote: > hi all: > > i am a new to pymol. could some one tell me more about the programs > involved in ligand interaction..... > > could i do protein protein interaction simulateions using pymol??? > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
