Hi, I've seen this when using modeller and then working in coot to change parts of my model. The pdb looked like this: ATOM 2 CA ALA A 61 19.187 -16.491 60.818 1.00 7.01 A C ATOM 3 CB ALA A 61 17.667 -16.537 61.040 1.00 7.01 A C ATOM 4 C ALA A 61 19.475 -16.919 59.419 1.00 7.01 A C ATOM 5 O ALA A 61 20.559 -16.678 58.892 1.00 7.01 A O ATOM 6 N GLY A 62 18.489 -17.575 58.780 1.00 9.64 N ATOM 7 CA GLY A 62 18.677 -18.017 57.433 1.00 9.64 C ATOM 8 C GLY A 62 19.240 -19.399 57.475 1.00 9.64 C ATOM 9 O GLY A 62 19.501 -20.003 56.436 1.00 9.64 O
The missing 'A' for the GLY at the end of the line was preventing the cartoon. Writing back the A did the trick. vincent Anastassis Perrakis wrote: > Dear all, > > I have a small domain which is mostly loops, its a Cys-knot. > All residues are in the preferred Rama regions, and all atoms are > present in the PDB, > but Pymol decides to 'break' my cartoon! > > Would anyone have a solution to force pymol draw a nice loop where the > break is? > (see small image attached) > > Thanks in advance, > > Tassos > > > > > > ------------------------------------------------------------------------ > -- Vincent Chaptal Dept. of Physiology at UCLA http://www.physiology.ucla.edu/Labs/Abramson/index.html <http://www.physiology.ucla.edu/Labs/Abramson/index.html/> Phone: 1-310-206-1399 IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
