What are you using to create the xyz file (and why can that software
not write a pdb)? The command you have below is pretty simple. An
alternative is also the xyzpdb program that comes as part of tinker.
( eg: xyzpdb graphite.xyz charmm22.prm gives you graphite.pdb )
-David
On Tue, Mar 9, 2010 at 7:46 PM, Cun Zhang <apzc2...@gmail.com> wrote:
> Hi,pymolers:
> I want to create a pdb file for the structure of graphite. But my
> method is a bit complex.
> I create the xyz file,then call pymol to translate it into pdb format
> with the command:
> os.system('pymol -cd "load graphite.xyz;save graphite.pdb"')
>
> Is there any easy way to create pdb file with the information of
> atoms' coordinates in pymol?
>
> Thank you!
>
>
> Cun Zhang
> Ph.D.Candidate
> LNM, Institude of Mechanics
> Chinese Academy of Sciences
> Beijing 100190, China
> Tel:86-10-82544204
>
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------------------------------------------------------------------------------
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Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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