> Looks like you don't have the python-devel package. This provides the
> header files such as Python.h you need for compiling python modules.
>
> -David
>
> On Fri, Mar 19, 2010 at 5:50 PM, Tatsiana Kirys <nus...@mail.ru> wrote:
> >
> >
> > Dear All,
> >
> > i'm trying to install pymol on suse. i've checked that i have penGL, glut,
> > libpng, tcl/tk, python,
> > freetype2 installed. But when running
> >
> > python setup.py build install
> >
> >i got erroes
> > could you please advise me what to do? thank you very much
I've installed it. But i have even more errors now:
nus...@linux-3mpg:~/Download/trunk/pymol> python setup.py build install
running build
running build_py
running build_ext
building 'pymol._cmd' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer3/Selector.c -o build/temp.linux-i686-2.6/layer3/Selector.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer1/PConv.h:20,
from layer3/Selector.c:29:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer3/Selector.c:19:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer4/Cmd.c -o build/temp.linux-i686-2.6/layer4/Cmd.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer4/Cmd.c:48:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer4/Cmd.c:47:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
layer4/Cmd.c: In function CmdCEAlign':
layer4/Cmd.c:8540: warning: implicit declaration of function getCoords'
layer4/Cmd.c:8544: warning: implicit declaration of function calcDM'
layer4/Cmd.c:8548: warning: implicit declaration of function calcS'
layer4/Cmd.c:8554: warning: implicit declaration of function findPath'
layer4/Cmd.c:8557: warning: implicit declaration of function findBest'
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer4/Export.c -o build/temp.linux-i686-2.6/layer4/Export.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer4/Export.c:21:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer4/Export.c:20:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer4/Menu.c -o build/temp.linux-i686-2.6/layer4/Menu.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer4/Menu.c:20:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer4/Menu.c:19:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer4/PopUp.c -o build/temp.linux-i686-2.6/layer4/PopUp.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer4/PopUp.c:20:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer4/PopUp.c:17:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer5/PyMOL.c -o build/temp.linux-i686-2.6/layer5/PyMOL.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer3/Selector.h:20,
from layer5/PyMOL.c:31:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer0/os_std.h:21,
from layer5/PyMOL.c:18:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
layer5/PyMOL.c: In function PyMOL_CmdGetMovieLength':
layer5/PyMOL.c:2119: warning: result.value' may be used uninitialized in this
function
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer5/TestPyMOL.c -o build/temp.linux-i686-2.6/layer5/TestPyMOL.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer2/ObjectCGO.h:20,
from layer5/TestPyMOL.c:29:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer5/TestPyMOL.c:21:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
gcc -pthread -fno-strict-aliasing -DNDEBUG -fomit-frame-pointer
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector
-funwind-tables -fasynchronous-unwind-tables -g -fwrapv -fPIC -D_PYMOL_MODULE
-D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -Iov/src -Ilayer0 -Ilayer1
-Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2
-Imodules/cealign/src -Imodules/cealign/src/tnt -I/usr/include/python2.6 -c
layer5/main.c -o build/temp.linux-i686-2.6/layer5/main.o -ffast-math
-funroll-loops -O3
In file included from /usr/include/python2.6/Python.h:8,
from layer0/os_python.h:30,
from layer5/main.c:19:
/usr/include/python2.6/pyconfig.h:1055:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/malloc.h:24,
from layer0/os_predef.h:193,
from layer5/main.c:18:
/usr/include/features.h:210:1: warning: this is the location of the previous
definition
g++ -pthread -shared
build/temp.linux-i686-2.6/modules/cealign/src/ccealignmodule.o
build/temp.linux-i686-2.6/ov/src/OVContext.o
build/temp.linux-i686-2.6/ov/src/OVHeapArray.o
build/temp.linux-i686-2.6/ov/src/OVHeap.o
build/temp.linux-i686-2.6/ov/src/OVLexicon.o
build/temp.linux-i686-2.6/ov/src/OVOneToOne.o
build/temp.linux-i686-2.6/ov/src/OVOneToAny.o
build/temp.linux-i686-2.6/ov/src/OVRandom.o
build/temp.linux-i686-2.6/ov/src/ov_utility.o
build/temp.linux-i686-2.6/layer0/Block.o
build/temp.linux-i686-2.6/layer0/Crystal.o
build/temp.linux-i686-2.6/layer0/Debug.o
build/temp.linux-i686-2.6/layer0/Deferred.o
build/temp.linux-i686-2.6/layer0/Err.o
build/temp.linux-i686-2.6/layer0/Feedback.o
build/temp.linux-i686-2.6/layer0/Field.o
build/temp.linux-i686-2.6/layer0/Isosurf.o
build/temp.linux-i686-2.6/layer0/Map.o build/temp.linux-i686-2.6/layer0/Match.o
build/temp.linux-i686-2.6/layer0/Matrix.o
build/temp.linux-i686-2.6/layer0/MemoryDebug.o
build/temp.linux-i686-2.6/layer0/MemoryCache.o
build/temp.linux-i686-2.6/layer0/MyPNG.o
build/temp.linux-i686-2.6/layer0/Parse.o
build/temp.linux-i686-2.6/layer0/Pixmap.o
build/temp.linux-i686-2.6/layer0/Queue.o build/temp.linux-i686-2.6/layer0/Raw.o
build/temp.linux-i686-2.6/layer0/Sphere.o
build/temp.linux-i686-2.6/layer0/Tetsurf.o
build/temp.linux-i686-2.6/layer0/Texture.o
build/temp.linux-i686-2.6/layer0/Tracker.o
build/temp.linux-i686-2.6/layer0/Triangle.o
build/temp.linux-i686-2.6/layer0/Util.o
build/temp.linux-i686-2.6/layer0/Vector.o
build/temp.linux-i686-2.6/layer0/Word.o
build/temp.linux-i686-2.6/layer0/os_gl.o
build/temp.linux-i686-2.6/layer1/Basis.o
build/temp.linux-i686-2.6/layer1/ButMode.o
build/temp.linux-i686-2.6/layer1/Character.o
build/temp.linux-i686-2.6/layer1/CGO.o build/temp.linux-i686-2.6/layer1/Color.o
build/temp.linux-i686-2.6/layer1/Control.o
build/temp.linux-i686-2.6/layer1/Extrude.o
build/temp.linux-i686-2.6/layer1/Font.o
build/temp.linux-i686-2.6/layer1/FontType.o
build/temp.linux-i686-2.6/layer1/FontGLUT.o
build/temp.linux-i686-2.6/layer1/FontGLUT8x13.o
build/temp.linux-i686-2.6/layer1/FontGLUT9x15.o
build/temp.linux-i686-2.6/layer1/FontGLUTHel10.o
build/temp.linux-i686-2.6/layer1/FontGLUTHel12.o
build/temp.linux-i686-2.6/layer1/FontGLUTHel18.o
build/temp.linux-i686-2.6/layer1/Movie.o
build/temp.linux-i686-2.6/layer1/Ortho.o build/temp.linux-i686-2.6/layer1/P.o
build/temp.linux-i686-2.6/layer1/PConv.o build/temp.linux-i686-2.6/layer1/Pop.o
build/temp.linux-i686-2.6/layer1/PyMOLObject.o
build/temp.linux-i686-2.6/layer1/Ray.o build/temp.linux-i686-2.6/layer1/Rep.o
build/temp.linux-i686-2.6/layer1/Scene.o
build/temp.linux-i686-2.6/layer1/ScrollBar.o
build/temp.linux-i686-2.6/layer1/Seq.o
build/temp.linux-i686-2.6/layer1/Setting.o
build/temp.linux-i686-2.6/layer1/Shaker.o
build/temp.linux-i686-2.6/layer1/Symmetry.o
build/temp.linux-i686-2.6/layer1/Text.o
build/temp.linux-i686-2.6/layer1/TypeFace.o
build/temp.linux-i686-2.6/layer1/Wizard.o
build/temp.linux-i686-2.6/layer1/View.o
build/temp.linux-i686-2.6/layer2/AtomInfo.o
build/temp.linux-i686-2.6/layer2/CoordSet.o
build/temp.linux-i686-2.6/layer2/GadgetSet.o
build/temp.linux-i686-2.6/layer2/DistSet.o
build/temp.linux-i686-2.6/layer2/ObjectAlignment.o
build/temp.linux-i686-2.6/layer2/ObjectCGO.o
build/temp.linux-i686-2.6/layer2/ObjectCallback.o
build/temp.linux-i686-2.6/layer2/ObjectDist.o
build/temp.linux-i686-2.6/layer2/ObjectMap.o
build/temp.linux-i686-2.6/layer2/ObjectMesh.o
build/temp.linux-i686-2.6/layer2/ObjectMolecule.o
build/temp.linux-i686-2.6/layer2/ObjectMolecule2.o
build/temp.linux-i686-2.6/layer2/ObjectSurface.o
build/temp.linux-i686-2.6/layer2/ObjectSlice.o
build/temp.linux-i686-2.6/layer2/RepCartoon.o
build/temp.linux-i686-2.6/layer2/RepCylBond.o
build/temp.linux-i686-2.6/layer2/RepDistDash.o
build/temp.linux-i686-2.6/layer2/RepDistLabel.o
build/temp.linux-i686-2.6/layer2/RepDot.o
build/temp.linux-i686-2.6/layer2/RepLabel.o
build/temp.linux-i686-2.6/layer2/RepMesh.o
build/temp.linux-i686-2.6/layer2/ObjectGadget.o
build/temp.linux-i686-2.6/layer2/ObjectGadgetRamp.o
build/temp.linux-i686-2.6/layer2/ObjectGroup.o
build/temp.linux-i686-2.6/layer2/RepAngle.o
build/temp.linux-i686-2.6/layer2/RepDihedral.o
build/temp.linux-i686-2.6/layer2/RepNonbonded.o
build/temp.linux-i686-2.6/layer2/RepNonbondedSphere.o
build/temp.linux-i686-2.6/layer2/RepRibbon.o
build/temp.linux-i686-2.6/layer2/RepSphere.o
build/temp.linux-i686-2.6/layer2/RepEllipsoid.o
build/temp.linux-i686-2.6/layer2/RepSurface.o
build/temp.linux-i686-2.6/layer2/RepWireBond.o
build/temp.linux-i686-2.6/layer2/Sculpt.o
build/temp.linux-i686-2.6/layer2/SculptCache.o
build/temp.linux-i686-2.6/layer2/VFont.o
build/temp.linux-i686-2.6/layer3/PlugIOManager.o
build/temp.linux-i686-2.6/layer3/Editor.o
build/temp.linux-i686-2.6/layer3/Executive.o
build/temp.linux-i686-2.6/layer3/Seeker.o
build/temp.linux-i686-2.6/layer3/Selector.o
build/temp.linux-i686-2.6/layer4/Cmd.o
build/temp.linux-i686-2.6/layer4/Export.o
build/temp.linux-i686-2.6/layer4/Menu.o
build/temp.linux-i686-2.6/layer4/PopUp.o
build/temp.linux-i686-2.6/layer5/PyMOL.o
build/temp.linux-i686-2.6/layer5/TestPyMOL.o
build/temp.linux-i686-2.6/layer5/main.o -L/usr/X11R6/lib -L/usr/lib -lGL -lGLU
-lglut -lpng -lz -lfreetype -lpython2.6 -o
build/lib.linux-i686-2.6/pymol/_cmd.so
/usr/lib/gcc/i586-suse-linux/4.4/../../../../i586-suse-linux/bin/ld: cannot
find -lpng
collect2: ld returned 1 exit status
error: command 'g++' failed with exit status 1
i'd appreciate your help very much!
kind regards
Tania
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