Hi all, I've been trying to get APBS Tools and/or APBSTools2 running for a few weeks now on multiple linux systems (RedHat and Fedora). I've Installed MALOC and APBS Tools. I can start up Pymol through Phenix, load a .pqr generated from a PDB2PQR server, start APBS Tools, set the grid, but when I click on Run APBS I get: "ObjectMapLoadDXFile-Error: Unable to open file!"
If I use the "pymol generated PQR" option with my .pqr even though it is a PDB2PQR server generated file APBS runs and states "X atoms did not have properties assigned" and to either remove or fix the atoms. How can I fix them? The "problem" residues are just regular amino acids; no split confrimations etc. I've also tried editing out the PDBs chain name before converting to the PDB to PQR but that didn't work. Another things I've tried is using APBSTools 2 but it errors as soon as I click "set grid" with: Error: 2 ... Attribute Error: elec_radius. I really need to get this to work but I have no clue what to try next. Thanks in advance for any thoughts. -Jon ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
