Hi everyone,
I am trying to find a way, in Pymol, to remove an amino acid from a peptide
and insert any other amino acid. I have been able to do this for one residue
at a time using the command
editor.attach_fragment(‘pk1′,’my_fragment_name’,11,0)
but I have to do this in two parts so that the new amino acid binds at both
ends. I was wondering if there is a way in which Pymol can “swap” an
existing side chain at position N on the peptide for any other side chain in
an automated fashion?
Any help much appreciated.
Angela
--
Angela Gray
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