Thanks a lot! That helped! Carsten Siebenhaar
- Am 24.05.2010 um 21:50 schrieb Folmer Fredslund: > Dear Carsten, > > On 17 May 2010 14:39, Carsten Siebenhaar <csie...@gwdg.de> wrote: >> Hello, I'm new to this board. >> I came across a certain problem with the mutagenesis tool. I got a pdb-file >> with amino acids that are partly displayed as 2 rotamers (so one amino acid >> displayed in two different ways in the Viewer). >> Usually, the mutagenesis tool works fine, but if you try to mutate this >> amino acid it won't accept it, but will just mention in the external GUI >> that it selected the corresponding atoms: >>> You clicked /11//A/HIS`509/CD2`A >> Selector: selection "sele" defined with 20 atoms.< >> PyMol keeps on asking me to pick a residue. >> >> Is there a way to easily avoid this problem or could this be considered a >> real bug? >> Thanks a lot! >> Carsten > > > Do you want to retain the double conformations? If not, then you could > use PyMOL to delete the alternate conformations thus, just retaining > one of them. > > # select & remove all non A altlocs > remove not (alt ''+A) > # reset the PDB information > alter all, alt='' > > taken from: > http://pymolwiki.org/index.php/Property_Selectors#Alternate_Locations > > > I hope this helps. > Folmer Fredslund > > >> >> >> ------------------------------------------------------------------------------ >> >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
