Dear Humayun,
On 4 June 2010 13:30, humayun scherrif <hum....@gmail.com> wrote: > Dear All, > Is there any way of color coding sequence conservation of a protein onto > structure by using multiple sequence alignment and structure in pymol ? > It might be possible to do this in PyMOL, but I would strongly advise you to have a look at ALINE: http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/ Here you can color the alignment and export the colors to a PyMOL script. This is at least one way to do it. Best regards, Folmer Fredslund > > Thanks in advance > > -- > Best Regards, > > Humayun Sharif > MS student > Protein Structure and Function Laboratory > Gwangju Institute Of Science & Technology, > Gwangju, 500-712, Republic of Korea > Tel (Res) :+82-62-718-4176 > Tel (Lab) : +82-62-970-2549 > Email: hum....@gmail.com > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
