Hi,
Your assumptions are correct, as I've copied and tested your code, which
works fine from the current working directory where I ran the pymol start
script. It's probably a quirk w/ your installation? Otherwise, you can just
specify the full path to your script or "cd" into the folder... either way.
Goodluck,
Paul
On Fri, Jul 9, 2010 at 11:01 AM, Robert Campbell <robert.campb...@queensu.ca
> wrote:
> On Fri, 09 Jul 2010 13:46:57 -0400 Vivek Ranjan <vran...@gmail.com> wrote:
>
> > Hello,
> >
> > I am trying to run a simple python script from Pymol and cannot run it:
>
> <snip>
>
> > I saved the above in a file named "axes.py" and put it in the same
> > directory from where I type "pymol" (on ubuntu linux). Then I type
> > "run axes.py" in pymol command bar. I get the following error message:
> >
> > *****************************************
> > Traceback (most recent call last):
> > File "/usr/local/lib/python2.6/dist-packages/pymol/parser.py", line
> > 334, in parse
> > parsing.run_file(path,self.pymol_names,self.pymol_names)
> > File "/usr/local/lib/python2.6/dist-packages/pymol/parsing.py", line
> > 455, in run_file
> > execfile(file,global_ns,local_ns)
> > IOError: [Errno 2] No such file or directory: 'axes.py'
> > *******************************************************************
> >
> > Any help ?
>
> Try typing the command "pwd" within PyMOL to see if it reports that you are
> in the directory that you think you are. Also try typing "ls axes.py" to
> see
> if it can see it. Are you sure you haven't made a typo in the name of the
> file? Otherwise I don't see why what you have done shouldn't work.
>
> Cheers,
> Rob
> --
> Robert L. Campbell, Ph.D.
> Senior Research Associate/Adjunct Assistant Professor
> Botterell Hall Rm 644
> Department of Biochemistry, Queen's University,
> Kingston, ON K7L 3N6 Canada
> Tel: 613-533-6821 Fax: 613-533-2497
> <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc
>
>
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--
Paul Rigor
http://www.ics.uci.edu/~prigor
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