I use these commands:
cmd.reset()
cmd.origin(position=[0,0,0])
cmd.center("origin")
cmd.move('z',-cmd.get_view()[11])
Raluca
On Thu, 09 Sep 2010 12:11:52 -0400
Philip Bransford <[email protected]> wrote:
> I am using PyMOL to generate a mesh of a protein. My
>commands look like
> this:
>
> load prot.pdb
> show surface
> save surf.obj
>
> The mesh surf.obj (or surf.wrl) is rotated and translated
>relative to
> the atomic coordinates in prot.pdb. Is there some way to
>prevent this
> from happening? For my application I need to interpolate
>from the mesh
> to the atomic coordinates, so the two must be aligned.
>
> Phil
>
>
>
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