Sergey,
After looking over your data (in another email), PyMOL was not zooming
correctly because none of your "atoms" were connected. (PyMOL got the
extents right, but was still confused.) To get around this, you can
just create a simple connected object, like a methane (8 atoms) and
position each atom the bounds of your box. PyMOL will know how to
zoom on that object.
Cheers,
-- Jason
On Tue, Sep 21, 2010 at 1:40 PM, Sergey Ivanov <icegood1...@gmail.com> wrote:
> Why in case when ray tracing is off image is cutted after load procedure?
> cmd.zoom("all", 0.0, 0, 1)
> doesn't help
>
> --
> Kind regards,
> Sergey Ivanov
>
> ------------------------------------------------------------------------------
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
------------------------------------------------------------------------------
Start uncovering the many advantages of virtual appliances
and start using them to simplify application deployment and
accelerate your shift to cloud computing.
http://p.sf.net/sfu/novell-sfdev2dev
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