Hi all,
I'm trying to build pymol-svn-3924 on a* *CentOS 5.5 x86_64 box.
The "distutil" way doesn't work with Intel's compiler's 10.1 (work's
with GNU) :
# export CC='icc'; export CXX='icpc'; export F77='ifort'
# python setup.py build
# python setup.py install
# python setup2.py install
# ./pymol
Traceback (most recent call last):
File "/usr/lib64/python2.4/site-packages/pymol/__init__.py", line
184, in ?
import pymol
File "/usr/lib64/python2.4/site-packages/pymol/__init__.py", line
472, in ?
import _cmd
ImportError: /usr/lib64/python2.4/site-packages/pymol/_cmd.so: undefined
symbol: __builtin_object_size
On the other hand, the "GNU autotools" way doesn't work either with any
compiler :
- 1) "ce_types.h" is not found when compiling Cmd.c (I just had to fix
the include path to look in the correct location)
- 2) After completing the compile process, the resulting
"libpymol.so.0.0.0" is not "fully" operational :
# /usr/xtal/pymol/bin/pymol
Traceback (most recent call last):
File "/usr/xtal/pymol/modules/launch_pymol.py", line 32, in ?
import pymol
File "/usr/xtal/pymol/modules/pymol/__init__.py", line 472, in ?
import _cmd
ImportError: /usr/xtal/pymol/modules/pymol/_cmd.so: undefined symbol:
findBest
Anyone can help me to compile pymol with Intel compilers ?
Regards,
Rafael.
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