Hello Sergey, On Mon, 10 Jan 2011 16:38:52 +0100 Sergey Ivanov <icegood1...@gmail.com> wrote:
> Have pdb file with pseudobeads: > MODEL 2 > HETATM 1 O 24.000 46.000 39.000 > HETATM 2 O 24.000 47.000 39.000 etc. I displayed this file using Nathan's suggestion to set all_states to 1. That appeared to work just fine. But then I noticed that your second model is simply a box. If that is what you always have in the second model, you could replace that with a "CRYST1" line used to represent the unit cell of a crystal structure. Hence, your file could look like this: CRYST1 50.00 50.000 50.000 90.00 90.00 90.00 P 1 HETATM 1 O 24.000 46.000 39.000 HETATM 2 O 24.000 47.000 39.000 HETATM 3 O 24.000 47.000 38.000 HETATM 4 O 25.000 47.000 38.000 HETATM 5 O 25.000 47.000 39.000 HETATM 6 O 25.000 46.000 39.000 HETATM 7 O 25.000 45.000 39.000 HETATM 8 O 25.000 45.000 40.000 HETATM 9 O 26.000 45.000 40.000 HETATM 10 O 26.000 45.000 39.000 HETATM 11 O 26.000 45.000 38.000 HETATM 12 O 25.000 45.000 38.000 HETATM 13 N 11.000 43.000 8.000 HETATM 14 C 12.000 43.000 8.000 HETATM 15 C 13.000 43.000 8.000 HETATM 16 C 13.000 44.000 8.000 HETATM 17 N 0.000 5.000 29.000 HETATM 18 C 49.000 5.000 29.000 HETATM 19 C 48.000 5.000 29.000 HETATM 20 C 47.000 5.000 29.000 HETATM 21 N 23.000 30.000 17.000 HETATM 22 C 22.000 30.000 17.000 HETATM 23 C 21.000 30.000 17.000 HETATM 24 C 20.000 30.000 17.000 END Then you can turn on the display of the box by showing the "cell" representation for the object (under the "S" menu or by typing "show cell"). Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ Gaining the trust of online customers is vital for the success of any company that requires sensitive data to be transmitted over the Web. Learn how to best implement a security strategy that keeps consumers' information secure and instills the confidence they need to proceed with transactions. http://p.sf.net/sfu/oracle-sfdevnl _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
