Hi Tomas, for structures from the PDB, PISA offers you XML download.
Example: http://www.ebi.ac.uk/msd-srv/pisa/cgi-bin/interfaces.pisa?2x19 You could write a python script to load these results into PyMOL. Cheers, Thomas 2011/3/14 Tomáš Kučera: > Hello, > > yes, I tried pisa, works great, but how can I visualise the output > from pisa in pymol? I am not able to download residue list which are > in interface, I can see just table where are interface residues > marked. > > Tomas > > Dne 14. března 2011 14:56 Thomas Holder > <spel...@users.sourceforge.net> napsal(a): >> Hi Tomas, >> >> have you checked PISA? >> http://pdbe.org/pisa >> >> You can also run PISA locally, it's part of the CCP4 suite (however, >> the output is not that easy to parse). >> http://www.ccp4.ac.uk/ >> >> Cheers, >> Thomas -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Colocation vs. Managed Hosting A question and answer guide to determining the best fit for your organization - today and in the future. http://p.sf.net/sfu/internap-sfd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
