Hello kanika, your multiplication and your python syntax for multiplication are wrong, it must be: alter_state 1, 3m8v_a, (x,y,z)=((-0.5*x+0.866025*y), (0.866025*x+0.5*y),-z)
For REMARK 350, check these scripts: http://www.pymolwiki.org/index.php/BiologicalUnit http://www.pymolwiki.org/index.php/BiologicalUnit/Quat Cheers, Thomas On Wed, Mar 23, 2011 at 12:09 PM, kanika sharma <ksharma...@gmail.com> wrote: > for protein 3m8v, the alter_state command I am using for REM350 is: > create 3m8v_a, 3m8v > alter_state 1, 3m8v_a, (x,y,z)=((-0.5+0.866025)x+(0.866025+0.5)y,-z) > But it gives error at x saying invalid syntax..According to > BIOMT transformations i think this should be the correct equation.. > I shall be thankful if anyone can let me know the bug.. > PDB file shot is: > 3M8V > REMARK 350 BIOMOLECULE: 1 > > REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC > > REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC > > REMARK 350 SOFTWARE USED: PISA > > REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 > > REMARK 350 SURFACE AREA OF THE COMPLEX: 12290 ANGSTROM**2 > > REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL > > REMARK 350 APPLY THE FOLLOWING TO CHAINS: A > > REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 > > REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 > > REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 > > REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 > > REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 > > REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 > > > > Regards, > kanika -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro (TM) technology - will your software be a part of the solution? Download the Intel(R) Manageability Checker today! http://p.sf.net/sfu/intel-dev2devmar _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
