Hi David,
I actually ended up using the python distools instead. However, the viewer
flickers =\ Below is the log when starting up PyMol over X-windows from a
Mac OS X 10.6.x client. Anyone encounter similar issues?
Detected OpenGL version prior to 2.0. Shaders unavailable.
OpenGL graphics engine:
GL_VENDOR: ATI Technologies Inc.
GL_RENDERER: ATI Radeon HD 2600 OpenGL Engine
GL_VERSION: 1.4 (2.1 ATI-1.6.26)
Adjusting settings to improve performance for ATI cards.
Detected 16 CPU cores. Enabled multithreaded rendering.
OpenGL quad-buffer stereo 3D detected and enabled
Thanks,
Paul
--
Paul Rigor
http://www.ics.uci.edu/~prigor
On Wed, Apr 6, 2011 at 3:07 PM, <li...@cowsandmilk.net> wrote:
> I found the ce_types.h problem happens with autotools, but not with
> setup.py method.
>
> -David
>
> On Apr 6, 2011, at 5:59 PM, Paul Rigor <paul.ri...@uci.edu> wrote:
>
> Hi all,
>
> So I tried compiling the 1.4b today and came across a couple of issues.
> 1) The layer3/Executive.c is attempting to include "ce_types.h" locally but
> the header file is actually under 'modules/cealign/src'
>
> 2) With a quick hack, I was able to compile. However, when attempting to
> run the binary, I get the following error:
> ImportError: /lv_disk00/preserve/tmp/pymol/modules/pymol/_cmd.so:
> undefined symbol: _ZNSs4_Rep20_S_empty_rep_storageE
>
> However, it seems that there is no missing library dependency (quick check
> with ldd).
>
> Has anyone run into any of these issues. I'm running python 2.6 on a CentOS
> 5.5 distro on a 64-bit machine.
>
> Thanks,
> paul
>
> --
> Paul Rigor
> <http://www.ics.uci.edu/~prigor>http://www.ics.uci.edu/~prigor
>
>
>
> On Mon, Apr 4, 2011 at 6:07 AM, Tru Huynh < <t...@pasteur.fr>t...@pasteur.fr
> > wrote:
>
>> Hi Jason,
>>
>> On Mon, Apr 04, 2011 at 08:19:17AM -0400, Jason Vertrees wrote:
>> >
>> > As you have discovered, and I forgot to mention, Python 2.5 or later
>> > is now required. This is due to 64-bit types using Py_ssize_t.
>>
>> If the patch is the only thing needed to support "Py_ssize_t" for python
>> 2.4
>> please consider adding it for "backport".
>>
>> Cheers,
>>
>> Tru
>>
>> --
>> Dr Tru Huynh | <http://www.pasteur.fr/recherche/unites/Binfs/>
>> http://www.pasteur.fr/recherche/unites/Binfs/
>> mailto: <t...@pasteur.fr>t...@pasteur.fr | tel/fax +33 1 45 68 87 37/19
>> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
>>
>>
>> ------------------------------------------------------------------------------
>> Create and publish websites with WebMatrix
>> Use the most popular FREE web apps or write code yourself;
>> WebMatrix provides all the features you need to develop and
>> publish your website. <http://p.sf.net/sfu/ms-webmatrix-sf>
>> http://p.sf.net/sfu/ms-webmatrix-sf
>> _______________________________________________
>> PyMOL-users mailing list ( <PyMOL-users@lists.sourceforge.net>
>> PyMOL-users@lists.sourceforge.net)
>> Info Page: <https://lists.sourceforge.net/lists/listinfo/pymol-users>
>> https://lists.sourceforge.net/lists/listinfo/pymol-users
>> Archives: <http://www.mail-archive.com/pymol-users@lists.sourceforge.net>
>> http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>>
>
>
> ------------------------------------------------------------------------------
> Xperia(TM) PLAY
> It's a major breakthrough. An authentic gaming
> smartphone on the nation's most reliable network.
> And it wants your games.
> http://p.sf.net/sfu/verizon-sfdev
>
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: <https://lists.sourceforge.net/lists/listinfo/pymol-users>
> https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: <http://www.mail-archive.com/pymol-users@lists.sourceforge.net>
> http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
>
------------------------------------------------------------------------------
Xperia(TM) PLAY
It's a major breakthrough. An authentic gaming
smartphone on the nation's most reliable network.
And it wants your games.
http://p.sf.net/sfu/verizon-sfdev
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
