Hi Bernhard,
I just compiled and installed PyMOL v1.4.1 on Ubuntu 11.04 on using a
virtual machine (Parallels). PyMOL worked fine except for some some
goofy rendering artifacts when you move the PyMOL window around.
Those artifacts go away when you click inside the window to resume
PyMOL. I believe these artifacts are due to the unity system or the
Parallels OpenGL drivers.
Does clicking inside the openGL window resume PyMOL or is PyMOL just frozen?
Also, I just pushed a change that includes better rendering for
volumes. This helped quite a bit on my VM.
Cheers,
-- Jason
On Thu, Jun 9, 2011 at 12:04 PM, Bernhard Lechtenberg <bc...@cam.ac.uk> wrote:
> Hello Jason
>
> all desktop effects should have been turned off, but just too make sure
> I started Ubuntu with the option 'Ubuntu Classic - no effects' but the
> problem with pymol still persists.
>
> Do you have any other ideas?
>
> Thanks,
> Bernhard
>
> -----Original Message-----
> From: Jason Vertrees <jason.vertr...@schrodinger.com>
> To: Bernhard Lechtenberg <bc...@cam.ac.uk>
> Cc: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] Problems with Pymol 1.4.1 under Ubuntu 11.04
> Date: Thu, 9 Jun 2011 11:24:27 -0400
>
> Bernhard,
>
> Do you have desktop effects (aka compositing) turned on? If so,
> please turn it off and try PyMOL again.
>
> Cheers,
>
> -- Jason
>
> On Thu, Jun 9, 2011 at 9:53 AM, Bernhard Lechtenberg <bc...@cam.ac.uk> wrote:
>> Dear Pymol users
>>
>> because I had the stick coloring problem with my Intel graphics board, I
>> just compiled Pymol 1.4.1 under Ubuntu 11.04 (had some problems there
>> and had to change from gcc4.5 to gcc4.4, but it then worked). However,
>> now I have another problem after starting pymol. The main Pymol Viewer
>> window pops up after starting pymol, but I don't see anything other than
>> the outer frame of the window with just a snapshot of the Desktop
>> background in the center. The other pymol window does not appear at all
>> and there are no error messages in the terminal, it only shows:
>>
>> PyMOL(TM) Molecular Graphics System, Version 1.4.1.
>> Copyright (c) Schrodinger, LLC.
>> All Rights Reserved.
>> {...cut out ...}
>> Detected OpenGL version 2.0 or greater. Shaders available.
>>
>> I did not have those problems with pymol 1.3.
>>
>> Any suggestions how to solve this problem would be highly appreciated.
>>
>> Thanks,
>> Bernhard
>>
>>
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>
>
>
>
>
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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