Holfelder! I don't see your doubts. Your first point's a guess - and you're right - and the second one a questions.
Before I answer, one warning: If you have 10000 pdb files and numbering starts at 1, the last one will be 10000, not 9999 like you say. Be aware of what you have. for i in range (1,10001): \ cmd.load("x_%d.pdb" %i) \ cmd.super("x_%d" %i, "x_1") Will load 10000 files and superpose every structure onto the first. The curious % notation substitutes a variable into a string. The load loads files and super superposes one structure onto another. Hope that helps. Andreas On 10/07/2011 12:05, Babban Mia wrote: > Hello Everyone > > I have got a doubt relating to making PYMOL MOVIE. > I have like 10,000 PDBs named x_1.pdb .....x_23.pdb and so on > > I want to make a movie which essentially should act as the slideshow > from x_1.pdb to ..... x_9999.pdb > > This would show,kind of show the MD simulations for the protein. > > DOUBTS : > > 1 . I guess I would have to align the pdbs wrt some source to actually > be able to see the real MD changes in the succeeding pdb structures. > 2. Please show me some commands on how I can achieve all of above. > > Thanks again > > Best > > Holfelder > > > > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously valuable. > Why? It contains a definitive record of application performance, security > threats, fraudulent activity, and more. Splunk takes this data and makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2d-c2 > > > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Andreas Förster, Research Associate Paul Freemont & Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net