Hi Babban, For modeling the polymers you probably want to try a docking program. Maybe HADDOCK suits your needs...
Hope it helps, Tsjerk On Sun, Jul 31, 2011 at 1:42 AM, Babban Mia <babban...@gmail.com> wrote: > Dear users, > > Is there some program to calculate the zeta potential or streaming > potential > of protein molecules (PDB files ) > > Is there some program to calculate the dipole moment of protein molecules > at > different PH values? > > > My last doubt is about creating polymers out a given PDB ? > I am studying the fibrils of some proteins and although the structure of > fibril is not know but through some analysis I have come to understand the > region in peptide which is leading to fibrillation. > I want to be able to create a PDB which has like 4/8/16 monomeric peptide > combined through some BETA PLEATED region(i.e the peptides will > join/aggregate around that region (beta region) of the peptide ) and all I > have is the PDB of the monomeric peptide. > Is there a possibility to make such peptides in Pymol or something ? Please > advise. > > Thanks for your help. > > Sincerely > > ------------------------------------------------------------------------------ > Got Input? Slashdot Needs You. > Take our quick survey online. Come on, we don't ask for help often. > Plus, you'll get a chance to win $100 to spend on ThinkGeek. > http://p.sf.net/sfu/slashdot-survey > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ Got Input? Slashdot Needs You. Take our quick survey online. Come on, we don't ask for help often. Plus, you'll get a chance to win $100 to spend on ThinkGeek. http://p.sf.net/sfu/slashdot-survey _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
