Hi Joel, > How can I extend the map around my protein as it appears to cross the > boundaries of the asu?
You can't... easily. This is something we need to add to PyMOL. For the time being you need to use symexp or (A>Generate>Symmetry Mates) to extend the protein into the density. Please file this as an RFE on the open-source tracker to help raise priority on this. > When I ray trace, the map disappears...so we can’t use the excellent > graphics Due to technicalities it's disabled by default. To enable it do, set ray_volume before ray tracing. We still have more work to do on the volumes. And, we _really_ appreciate feedback like this from our users--so please keep it coming. For a final, smoother volume-based representation you can turn up the volume_layers setting to something like 1024 or 2048 if your video card can handle it. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Get a FREE DOWNLOAD! and learn more about uberSVN rich system, user administration capabilities and model configuration. Take the hassle out of deploying and managing Subversion and the tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
