Thanks Robert
Can you please give out some examples on how to use them?
Please give out some appropriate links for stride and dssp
Thanks again!
Best
Anna
From: robert.fenw...@irbbarcelona.org
Date: Sat, 20 Aug 2011 08:49:56 +0200
Subject: Re: [PyMOL] Secondary Structure Element from a PDB file
To: annajamesmat...@hotmail.com
Stride or dssp will do this
Enviado desde mi iPod
El 20/08/2011, a las 08:33, Anna James <annajamesmat...@hotmail.com> escribió:
Is there any program/code/software which can give me the secondary structure
region in a given PDB file ?
like :
./ executable pdb1.pdb
answer would be :
alpha helical : 1- 8 residues
beta sheet : 17-29 residues
etc... so on
OR can this be done in Pymol ,I tried using dss but I guess it's purpose in
quiet entirely different
Please advise
I
have large number of PDBs of my long protein and need to analyze this
secondary structure content in them and is looking for some small C or
Python Code/Binary for it.
Best
Anna James Vaughan
Leeds
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