The xyz <http://en.wikipedia.org/wiki/XYZ_file_format> file format
opens easily with pymol (pymol fileName.xyz). I can find the id that pymol
gives to the ``atom'' via the GUI but I don't know what to do with it. I
tried select 2338 (a valid number) but I get
Selector-Error: Invalid selection name "2338"
2011/8/22 Troels Emtekær Linnet <tlin...@gmail.com>
> Is this a .pdb file which can be opened with pymol?
>
> Can you provide a file that pymol accepts?
> Can you in some way find the id number?
> Check out these commands in pymol:
>
>
> print cmd.get_names()
> print cmd.get_pdbstr("chain A")
> print cmd.get_pdbstr("chain A").splitlines()
> print cmd.get_pdbstr("chain A").splitlines()[3]
> print cmd.identify("chain A and name N")[0]
> print cmd.identify("chain A and name C")[-1]
>
> Troels Emtekær Linnet
> Karl-Liebknecht-Straße 53, 2 RE <http://maps.google.dk/>
> 04107 Leipzig, Tyskland
> Mobil: +49 1577-8944752
>
>
>
> 2011/8/22 Yotam Avital <yota...@gmail.com>
>
>> Hi.
>>
>> I have a xyz file in the following form:
>>
>> C 0 0 0
>> O 0 0 1
>> O 0 0 2
>> C 0 0 6
>> O 0 0 5
>> O 0 0 4
>> .
>> .
>> .
>>
>> How can I select an atom from the list? How can I measure an atom from
>> that list?
>> --
>> My other email account has a "professional" signature.
>>
>>
>>
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>>
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>
>
--
My other email account has a "professional" signature.
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