On Sun, Sep 11, 2011 at 3:59 AM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Hi Lina,
>
> have a look at:
> http://pymolwiki.org/index.**php/Polarpairs<http://pymolwiki.org/index.php/Polarpairs>
>
> it takes two selections and has a state argument.
>
Thanks for the link.
I still have a question:
1] save the script as polar_pairs.py
2] in pymol run polar_pairs.py
3] For
pairs = polarpairs('chain A', 'chain B')for p in pairs:
dist = cmd.get_distance('(%s`%s)' % p[0], '(%s`%s)' % p[1])
print p, 'Distance: %.2f' % (dist)
I don't know how to proceed this part, do I need to put those code in
another .py file?
sorry and thanks for your patience,
> Cheers,
> Thomas
>
> lina wrote, On 09/10/11 15:21:
>
> Hi,
>>
>> After dist hb, proA, proB, mode=2
>>
>> I can get the hydrogen bonds formation between protein A and protein B.
>>
>> But I don't know how to get the detailed involved residues very quickly,
>> suppose I have had 10 models in this structure.
>>
>> I googled before,
>> http://www.mail-archive.com/**pymol-users@lists.sourceforge.**
>> net/msg06211.html<http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg06211.html>
>> is helpful for the single one selections,
>> here I got two.
>>
>> Thanks for any suggestions,
>>
>> --
>> Best Regards,
>>
>> lina
>>
>
> --
> Thomas Holder
> MPI for Developmental Biology
> Spemannstr. 35
> D-72076 Tübingen
>
--
Best Regards,
lina
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