here it is:
http://www.pymolwiki.org/index.php/Displaying_Biochemical_Properties#Hydrogen_bonds_and_Polar_Contacts
vitali
On Mon, Nov 21, 2011 at 8:50 AM, rjayashree13-scie...@yahoo.co.in <
rjayashree13-scie...@yahoo.co.in> wrote:
> Thank you. It works, but it does not bring out the type of interaction
> responsible for interface contact-hydrogen bonding or electrostatic
> interaction etc.
> I am using another tool called PSAP for analyzing inter-molecular
> interactions (iris.physics.iisc.ernet.in/psap)
> It gives me the residues involved in hydrogen bonding, now using Pymol I
> can label these residues, but is there any way to depict these hydrogen
> bonds also and the distances?
>
> Dr. Jayashree Ramana
>
> <http://www.juit.ac.in/bio/jsr.php>
>
> ------------------------------
> *From:* Vitali Stanevich <stanev...@wisc.edu>
> *To:* "rjayashree13-scie...@yahoo.co.in" <rjayashree13-scie...@yahoo.co.in>
>
> *Cc:* "pymol-users@lists.sourceforge.net" <
> pymol-users@lists.sourceforge.net>
> *Sent:* Sunday, 20 November 2011 1:57 PM
> *Subject:* Re: [PyMOL] query
>
> check this out:
> http://www.pymolwiki.org/index.php/InterfaceResidues
>
> if you want faster and easier, but less reliable (in my opinion) way, you
> can analyze your .pdb with PISA:
> http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
>
> vitali
>
> On Sun, Nov 20, 2011 at 1:51 AM, rjayashree13-scie...@yahoo.co.in <
> rjayashree13-scie...@yahoo.co.in> wrote:
>
> I have a PDB file for a dimeric protein. Is it possible to depict the
> intersubunit contacts for any PDB file? Is Pymol alone sufficient for this
> purpose or will it only help visualization?
> Could you also tell me which commands in Pymol can I use for this purpose?
> I have tried a lot but could not get an answer to this. I will be very
> thankful for the favour.
>
> Dr. Jayashree Ramana
>
> <http://www.juit.ac.in/bio/jsr.php>
>
>
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