Dear Thomas and all advisers, Thanks for all, I've got installed pymol in CentOS5 from EPEL repository. Turning back to the package list by Yum Extender (yumex), I found 'pymol' appeared as http://lockerz.com/s/162790999 after http://lockerz.com/s/162790733
cf.) - Might need installed 'epel*' # rpm -i http://download.fedora.redhat.com/pub/epel/6/x86_64/epel-release-6-5.noarch.rpm - 'yumex' can be installed: # yum install yumex Can I add this information to pymolwiki (Need an account) ? http://www.pymolwiki.org/index.php/Linux_Install After PyMOL running, console says: "freeglut (pymol): Unable to create direct context rendering for window 'PyMOL Viewer'" but I will try to check and contact here as another issue if not succeeded. Regards, Masataka 2011/12/6 grantaka36 <grantak...@gmail.com>: > Dear Thomas, > > Thanks for good pointing for the weird problem, which I couldn't notice at > all. > >> You do compile with -D_FORTIFY_SOURCE=2, could you remove that? > I'm afraid, I know not related PyMOL itself, but I wish to know how to > do that. Searching 'setup.py', 'setup2.py' or some 'Makefile*' with > the string 'D_FORTIFY_SOURCE' or 'gcc' returned no matches. > > And Zhijian and Andreas, > > Thank you for advices through your experiences, I will pursue at first > as Thomas advised. > > Regards, > Masataka > > > 2011/12/5 Andreas Förster <docandr...@gmail.com>: >> Dear Masataka, >> >> a few months ago, I upgraded most of our computers from RHEL 5.x to 6.1. If >> version 6 of CentOS (free RHEL clone) is out, I would highly recommend, no I >> would urge you, to upgrade as well. RHEL and CentOS are rock-solid >> operating systems, but their libraries and dependencies show their age. >> >> >> Andreas >> >> >> >> On 05/12/2011 1:50, grantaka36 wrote: >>> >>> Hi, Marius, Troels and David, >>> >>> I appreciate very much for guiding, tried in three ways but no success >>> currently. >>> >>> - I also think some difference on distributions (CentOS 5 here,) trapped >>> at >>>> >>>> function 'IsosurfGetRange' >>> >>> Does anyone have information to workaround? >>> - Do you think if any dependency on Python version (2.4.3 here)? >>> >>> Attached '20111205_script_and_error.zip' is for information sharing: >>> - 'install_pymol.sh' : followed by below, some package name modified for >>> CentOS >>> >>> http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_with_MPEG_support >>> - 'install_pymol_sh_error.txt' >>>> >>>> layer0/Isosurf.c:2197:1: error: unterminated argument list invoking macro >>>> "fprintf" >>>> layer0/Isosurf.c: In function 'IsosurfGetRange': >>> >>> >>> - 'install_pymol_gcc45.sh' - aiming to use default installed gcc4.5 >>> instead of 4.4 >>> - 'install_pymol_gcc45_sh_error.txt' >>>> >>>> layer0/Isosurf.c: In function 'IsosurfGetRange': >>>> layer0/Isosurf.c:2197:0: error: unterminated argument list invoking macro >>>> "fprintf" >>> >>> >>> - 'compile_pymol.sh' : again by initial trying >>> http://www.pymolwiki.org/index.php/Linux_Install#Install_from_source >>> - 'compile_pymol_sh_error.txt' >>>> >>>> layer0/Isosurf.c: In function 'IsosurfGetRange': >>>> layer0/Isosurf.c:2197:0: error: unterminated argument list invoking macro >>>> "fprintf" >>> >>> >>> >>> Regards, >>> Masataka >>> >>> >> -- >> Andreas Förster, Research Associate >> Paul Freemont & Xiaodong Zhang Labs >> Department of Biochemistry, Imperial College London >> http://www.msf.bio.ic.ac.uk ------------------------------------------------------------------------------ Cloud Services Checklist: Pricing and Packaging Optimization This white paper is intended to serve as a reference, checklist and point of discussion for anyone considering optimizing the pricing and packaging model of a cloud services business. Read Now! http://www.accelacomm.com/jaw/sfnl/114/51491232/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
