Never mind. After restarting the computer fasta file is being written.
Vaheh
-----Original Message-----
From: Oganesyan, Vaheh [mailto:[email protected]]
Sent: Tuesday, December 27, 2011 11:16 AM
To: [email protected]
Subject: [PyMOL] sequence file extraction
I'm using ver. 1.4.1 and it looks like PyMOL recently lost the ability to
extract the sequence info.
I'm typing "save objectname.fasta" in old version and get the fasta file. In
1.4.1 it complains
=========================
Traceback (most recent call last):
File "C:\Program Files\PyMOL\PyMOL/modules\pymol\parser.py", line 254, in
parse
self.result=apply(layer.kw[0],layer.args,layer.kw_args)
File "C:\Program Files\PyMOL\PyMOL/modules\pymol\exporting.py", line 535, in
save
st = _self.get_fastastr(selection)
File "C:\Program Files\PyMOL\PyMOL/modules\pymol\exporting.py", line 178, in
get_fastastr
if seq.has_key(obj):
AttributeError: 'str' object has no attribute 'has_key'
=========================
Is there now a different way of extracting sequence info in PyMOL?
Thank you.
Vaheh
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