Hi Thomas.
I succeded with the last version of Pymol 1.4.x compilation, and have
written it here.
http://www.pymolwiki.org/index.php/Linux_Install#Red_Hat_Enterprise_Linux_RHEL_6_compile_and_install_with_MPEG_support_for_x86_64_bit
sudo yum install subversion gitsudo yum install python-imaging pygame
apbssudo yum install gcc-c++ python-devel python-pmw glew-devel
freeglut-devel libpng-devel freetype-devel
It was for RHEL 6, and so it should be the same for centos.
I have not yet tried for 1.5, since Jason said that it need python 2.7, and
our system comes with
python 2.6.6
Best
Troels
Troels Emtekær Linnet
Lyongade 24. 4.mf, 2300 København S
Mobil: +45 60210234
2012/2/14 Thomas Stout <tst...@exelixis.com>
> Hi All -
>
> I am trying to compile the open-source code for PyMOL for the first time
> (on CentOS) and running into all sorts of issues. Is there a listing
> somewhere of *all* the dependencies (and their versions) that I could use
> as a guide to get everything I need all at once, rather than continuing to
> fix compile failures one-at-a-time (which is confusing and frustrating)
>
> Conversely, is there a distro that more-or-less "just works"? I can
> create a virtual machine in which I compile, but I'm only allowed to have
> RHEL or CentOS on my physical machine...
>
> Thanks!
> -Tom
>
>
>
> ------------------------------
> *From:* Jason Vertrees [mailto:jason.vertr...@schrodinger.com]
> *Sent:* Mon 2/13/2012 11:27 AM
> *To:* pymol-users@lists.sourceforge.net
> *Subject:* [PyMOL] Open Source PyMOL v1.5.0.1
>
> Greetings,
>
> It is my pleasure to announce the release of open source PyMOL
> v1.5.0.1. The source code has been committed to the open-source
> repository. It is revision 3976. An svn tag and downloadable bz2
> source file were also created. All of this is accessible form the
> PyMOL project page on SourceForge
> (http://sourceforge.net/projects/pymol/).
>
> Before upgrading PyMOL -- please -- upgrade your video drivers! NVidia
> and AMD/ATI cards are known to work well. But, Intel Mobile and other
> low-end cards might have issues with the new rendering. The majority
> of rendering anomalies are fixed by simply upgrading your video
> drivers.
>
> You should be able to pull and build just like normal. You will need
> Python 2.7.
>
> Some simple testing on my Linux machine shows the following
> improvements in real-time rendering performance for a large protein
> (58,000 atom Gro-EL, PDB 1AON) with the new open-source PyMOL code:
>
> Lines:
> 240% increase (81 FPS to 270 FPS)
> Spheres:
> 864% increase (28 FPS to 270 FPS)
> Sticks:
> 2100% increase (8 FPS to 180 FPS)
> Cartoon:
> 3757% increase (27 to 270 FPS)
> Surface:
> 2600% increase (10 to 270 FPS)
> Mesh:
> 33% (180 FPS to 270 FPS)
>
> Your numbers will be different. This Linux machine has a powerful card
> used for development
> (
> http://www.amd.com/us/products/workstation/graphics/ati-firepro-3d/v8800/Pages/v8800.aspx
> ).
> It was generously donated by AMD. If you use an AMD/ATI card and PyMOL
> works for you it's because AMD/ATI helped out. You may want to thank
> them. What I've seen is that the more powerful your card the greater
> the _difference_ in speed. That is, low-end cards should see
> improvements in the range of tens to hundreds of percent while more
> powerful cards should register improvements like mine, in the
> thousands of percent for some representations.
>
> To quickly test performance of the new code on your machine just load
> a large structure (eg. 1AON; 3R8O and 3R8T) and quickly
> rotate/translate it. To see the refresh rate, type "set
> show_frame_rate". The refresh rate shows up in the lower right hand
> corner. Compare the frame rate, smoothness, and rendering quality when
> the setting "use_shaders" is turned off and when it's turned on.
> Compare different representations, each time turning on and off the
> "use_shaders" setting.
>
> You can quickly update old PyMOL session files to the new rendering by
> clicking, Settings > Rendering > Modernize after loading the old
> session file. PyMOL will flip all the right settings to update
> rendering. If the new code doesn't render properly, you can revert to
> the old style rendering by typing:
>
> set use_shaders, 0
>
> set sphere_mode, 0
>
>
> Please let us know how it goes.
>
> Cheers,
>
> -- Jason, Blaine & the PyMOL Team
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrödinger, LLC
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
>
>
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