Hi Benjamin,

transparency_mode is a global setting and so cannot be applied to
individual objects.

If you'd like to see this as a new feature, please request it:
https://sourceforge.net/tracker/?group_id=4546&atid=354546.

Cheers,

-- Jason

On Fri, Mar 2, 2012 at 9:42 AM, Benjamin Bouvier
<benjamin.bouv...@ibcp.fr> wrote:
> Hi all,
> Can recursive transparency be set on a per-object basis when raytracing
> with PyMol? I'm trying the obvious (chB and chA are molecular objects):
>
> set transparency_mode, 2, chB
> set transparency_mode, 1, chA
>
> ... which PyMol syntaxically accepts, but does not seem to give the
> expected results (mode 2 overall). Or is there another way?
>
> Thanks,
> Benjamin
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC

(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120

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Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing 
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