Hani, You can these GUI commands: A (Action)---preset---ligand sites or A---find---polar contacts
Hope this helps you! Peter syed.abidi skrev 2012-03-19 12:19: > Dear All, > > I have a small query regarding PyMol and I would appreciate if you can help > me with it. My query is: > > How do I analyze interactions with PyMol after I have docked my files? I > wanted to know which molecules/amino acids are interacting in the docked > confirmation. > > I would really appreciate your help. > > Thanks, > > Hani > > ________________________________ > > This e-mail may contain information that is privileged or confidential. If > you are not the intended recipient, please delete the e-mail and any > attachments and notify us immediately. > > > ------------------------------------------------------------------------------ > This SF email is sponsosred by: > Try Windows Azure free for 90 days Click Here > http://p.sf.net/sfu/sfd2d-msazure > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Peter Kjellen, Dr. Med. Sci. CEO Genedoc Pharmaceuticals AB Kullsbackavägen 30 239 42 Fasterbo Sweden Phone:+46 70 5952568 ------------------------------------------------------------------------------ This SF email is sponsosred by: Try Windows Azure free for 90 days Click Here http://p.sf.net/sfu/sfd2d-msazure _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
