Hi Darrell, > When using the plugin, I find it useful to use smooth loops and smooth > strands. Unfortunately, the script puts the supporting struts at the > C-alpha positions, not the splined positions that you get with smoothing. > The trick is to "show" a "line" representation of just the C-alpha at the > ends of the strut and use the "sidechain helper" option.
The trick would be modifying the structure to have the C-alphas placed at the spline control points. Not that hard to do, really. Cheers, Tsjerk -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
