Hi Jason, Thanks -- is there any way to add some limits to the scaling, say to alter the vdw radius from a value of 1 to 5 based on a b-factor range of values?
Doug On Jul 31, 2012, at 4:44 PM, Jason Vertrees wrote: > Hi Douglas, > > You can do something as simple as this: > > # fetch a protein > > fetch 1ejg, async=0 > > # show as spheres > > as spheres, n. CA > > # set the vdw radii = some factor of the b-factor > > alter n. CA, vdw=b/5 > > rebuild > > Cheers, > > -- Jason > > On Tue, Jul 31, 2012 at 3:36 PM, Douglas Kojetin > <douglas.koje...@gmail.com> wrote: >> Hi All, >> >> I would like to set the sphere size for each Ca atom proportional to the >> b-factor value (the larger the b-factor the larger the sphere size) and also >> color the sphere based on the b-factor value. Is there an easy way to >> adjust the sphere size according to b-factor value? >> >> Thanks, >> Doug >> >> >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrödinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
