Hi Jason,

Thanks -- is there any way to add some limits to the scaling, say to alter the 
vdw radius from a value of 1 to 5 based on a b-factor range of values?

Doug



On Jul 31, 2012, at 4:44 PM, Jason Vertrees wrote:

> Hi Douglas,
> 
> You can do something as simple as this:
> 
> # fetch a protein
> 
> fetch 1ejg, async=0
> 
> # show as spheres
> 
> as spheres, n. CA
> 
> # set the vdw radii = some factor of the b-factor
> 
> alter n. CA, vdw=b/5
> 
> rebuild
> 
> Cheers,
> 
> -- Jason
> 
> On Tue, Jul 31, 2012 at 3:36 PM, Douglas Kojetin
> <douglas.koje...@gmail.com> wrote:
>> Hi All,
>> 
>> I would like to set the sphere size for each Ca atom proportional to the 
>> b-factor value (the larger the b-factor the larger the sphere size) and also 
>> color the sphere based on the b-factor value.  Is there an easy way to 
>> adjust the sphere size according to b-factor value?
>> 
>> Thanks,
>> Doug
>> 
>> 
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> 
> 
> -- 
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrödinger, LLC
> 
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120


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threat landscape has changed and how IT managers can respond. Discussions 
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threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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