Hrellow James.
You could do it like this:
-----------------
reinitialize
fetch 2yh2, async=0
fetch 3zwq, async=0
super 3zwq, 2yh2
print cmd.get_names("objects")
print cmd.get_names("public_objects")
my_objects = cmd.get_names("public_objects")
python
for i in range(len(my_objects)):
cmd.create("my_protein", my_objects[i], 1, (i+1))
cmd.remove(my_objects[i])
cmd.delete(my_objects[i])
python end
show_as cartoon, my_protein
save my_protein.pdb, my_protein, state=0
set movie_fps, 1
mplay
-------------------------
Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
Mobil: +45 60210234
2012/9/23 James Starlight <jmsstarli...@gmail.com>
> Dear PyMol users!
>
> I've already created such topic and found sollution to it but now I
> forgot how exactly I did it :)
>
> The main task is the creation of the trajectory in NMR-like format
> from initial X-ray structures ( each of them is the indivixual
> snapshot for suture trajectory).
> E.g in Pymol I have opened 15 x-ray structures aligned against one
> reference. All of that structures also consist of different numbers of
> states (models). As the result I want to chose only first state from
> each of that structures and create new common pdb file consisted of
> each structure (total 15 snapshots). Its important that In that new
> NMR-like file order of the models must be corresponded to the order of
> structures in the PyMol window. How I could do that?
>
>
> Thanks for help
>
> James
>
>
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