Hi Martin, do you have "retain_order" set to 1? This is not the default. Try:
unset retain_order save file.pdb Cheers, Thomas Martin Hediger wrote, On 09/25/12 18:24: > Dear PyMOL list > I'm adding hydrogens to a crystal structure. Upon saving, however, I > realize all hydrogens have been added to the beginning of the PDB file. > Can PyMOL be configured such that the hydrogens are placed at the > "intuitively appropriate" place in the PDB file? > > Thanks for any hints. > Martin -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
