Hi John, here is something to start with:
# put everything in state 1 (convert states to objects) split_states capsid delete capsid # specify the fixed residue select fixedresidue, capsid_0001 and chain D and resi 30 # select residues of interest within given radius select s1, chain A+B+C and resi 23+45+46 select s2, s1 within 40 of fixedresidue # highlight result color blue color yellow, s2 See also: http://pymolwiki.org/index.php/Selection_Algebra#Comparison_of_distance_operators Cheers, Thomas On 11/15/2012 10:47 AM, Jonathan Grimes wrote: > > i am wanting to highlight a number of residues on a virus capsid. i have > 60 > states (objects), and wanted to only select particular residues (say resi > 23,45,46 from 3 chains across all > 60 objects) that are within say 20A or 40A from a fixed point (or > residue). > > could i get advice on what scripts i could use/edit to get this done. > > thanks > jon > > > > Dr. Jonathan M. Grimes, > NDM Senior Reseach Fellow > University Research Lecturer > Division of Structural Biology > Wellcome Trust Centre for Human Genetics > University of Oxford > Roosevelt Drive, > Oxford OX3 7BN, UK > > Email: jonat...@strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk > Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547 ------------------------------------------------------------------------------ Monitor your physical, virtual and cloud infrastructure from a single web console. Get in-depth insight into apps, servers, databases, vmware, SAP, cloud infrastructure, etc. Download 30-day Free Trial. Pricing starts from $795 for 25 servers or applications! http://p.sf.net/sfu/zoho_dev2dev_nov _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
