Hi Erik, Can you please send me a copy of one of the problematic sessions?
Cheers, -- Jason On Tue, Nov 27, 2012 at 11:23 AM, Erik Nelson <[email protected]> wrote: > > I use pymol to generate images of simple polymers by loading their > coordinates as > .pdb files. The 'polymer .pdb' files contain only alpha carbon coordinates. > I connect > them using the ribbon_trace option, and color them by varying b-factors in > the .pdb > file. > > I had created many different movies and figures this way, and I saved the > sessions > as .pse files. Just recently, I went back to view some of these sessions and > they just > loaded as blank screens. > > I tried creating more images as before - using the ribbon_trace option to > connect the > atoms - but it no longer works. > > I'm pretty sure I didn't change any options in pymol, so I'm wondering if > pymol > somehow updated itself, or some update of my mac airbook affected the pymol > program. Neither of these seems very likely. > > What went wrong? Is there a way I can fix this? > > A more general question. It seems like there must be a better way to > visualise a > polymer, say as a ball an stick image. Is there a more straight forward way > of doing > this in pymol? > > Thanks, Erik > > -- > Erik Nelson > > Howard Hughes Medical Institute > 6001 Forest Park Blvd., Room ND10.124 > Dallas, Texas 75235-9050 > > p : 214 645 5981 > f : 214 645 5948 > > ------------------------------------------------------------------------------ > Monitor your physical, virtual and cloud infrastructure from a single > web console. Get in-depth insight into apps, servers, databases, vmware, > SAP, cloud infrastructure, etc. Download 30-day Free Trial. > Pricing starts from $795 for 25 servers or applications! > http://p.sf.net/sfu/zoho_dev2dev_nov > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] -- Jason Vertrees, PhD Director of Core Modeling Product Management Schrödinger, Inc. (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Monitor your physical, virtual and cloud infrastructure from a single web console. Get in-depth insight into apps, servers, databases, vmware, SAP, cloud infrastructure, etc. Download 30-day Free Trial. Pricing starts from $795 for 25 servers or applications! http://p.sf.net/sfu/zoho_dev2dev_nov _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
