Hi grid bird, the label command is parsed in "literal" mode, which means the semicolon is not recognized as command separator. Try this instead:
/usr/bin/pymol -d 'fetch 1D5R, async=0; show_as cartoon; spectrum b; select t0, (resi 30); color red, selection=t0; show spheres, selection=t0; label t0, "test message"' -d 'save t0.pse' Cheers, Thomas grid bird wrote, On 12/20/12 17:49: > Hi all, > > I am trying to use PyMol version 1.2r1 to do one test but I always > failed to label my selection. > the command line I used is the following: > > /usr/bin/pymol 1D5R.pdb 'show_as cartoon; spectrum b; sele t0, (resi > 30); color red, selection=t0; show spheres, selection=t0; label t0, > "test message"; save t0.pse;' > > I always got the error message as the following. Actually , I just want > to label my selection t0 with one string message. Any ideas ? thank you. > > Spectrum: range ( 9.77000 to 117.74000). > Selector: selection "t0" defined with 7 atoms. > Executive: Colored 7 atoms. > File "<string>", line 1 > label="test message"; save t0.pse; > ^ > SyntaxError: invalid syntax > Label: labelled 0 atoms. -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
