You are a genius Thomas!
On Mon, Feb 4, 2013 at 5:23 PM, Thomas Holder <thomas.hol...@schrodinger.com
> wrote:
> Hi Ali,
>
> paste this into the PyMOL command line:
>
> unset ribbon_color, (*)
> set ribbon_color, default
> for name in cmd.get_object_list(): \
> cmd.spectrum(selection=name + " and polymer")
>
> This will do rainbow coloring on each object separately.
>
> The "ribbon_color" setting will override atom colors, that's the reason
> why selecting color/rainbow from the menu has no effect in your session.
>
> Hope that helps.
>
> Cheers,
> Thomas
>
> Muhammad Naqvi wrote, On 02/04/13 18:38:
> > Hi Folks,
> > I have about 2000 pdb files loaded into one session, with their
> > backbones shown as ribbons, that have been aligned by select residues
> > ranging from 15-19 using the align_all command.
> >
> > The problem I have is coloring, right now I have to manually color in
> > rainbow into all of the residues by using the command:
> >
> > set ribbon_color, "color name", resi __#__
> >
> > but the transitions are not smooth.
> >
> > In addition, selecting color/rainbow using the all entry does not do
> > anything to the color. Changing the color manually for each entry,
> > however, works well. I can manually select the color button on each of
> > the pdb entries and select rainbow, but its not feasible to do for 2000
> > entries.
> >
> > I was wondering if there is an automated way of coloring each ribbon end
> > to end in the same rainbow.
> >
> > Best Regards,
> > Ali
>
> --
> Thomas Holder
> PyMOL Developer
> Schrödinger Contractor
>
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