Hi Jon,

there is no need to convert the pse file into a script, just write a short 
script which loads the pse file in the beginning.

load session.pse
scene 001, recall
viewport 800, 600
png scene001.png, ray=1

You can run that in batch mode.

Cheers,
  Thomas

On Mar 6, 2013, at 4:11 PM, Jonathan Grimes <jonat...@strubi.ox.ac.uk> wrote:
>   I've have a pse file with a number of scenes defined.   i would like to 
>   run the pse file without the gui…..but then select scenes via the external
>   gui window….and render……
> 
>   can i do this akin to batch mode ???   or can i convert the pse file into 
>   a pmol script ??
> 
>   each scene will take 30mins to render
>   i would also like to write out the scene as a vrml file…...i gave up after 
> an hour 
>   at the graphics machine.
> 
>    many thanks for your help
> 
>   jon
> 
> Dr. Jonathan M. Grimes, 
> NDM Senior Reseach Fellow
> University Research Lecturer
> Division of Structural Biology
> Wellcome Trust Centre for Human Genetics
> University of Oxford
> Roosevelt Drive,
> Oxford OX3 7BN, UK
> 
> Email: jonat...@strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk 
> Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547       

-- 
Thomas Holder
PyMOL Developer
Schrödinger Contractor


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