Hi, When I fetch a new structure (1YCR, for example) then run 'h_add 1ycr' the hydrogens are added to the structure as expected, but they are put in the sequence viewer as their own residue with the same chain.
This is problematic for several reasons, one is that it breaks selections, when I click on a heavy atom of a residue (in residue selection mode) only the heavy atoms are selected and not the hydrogens. Also, if I save the structure to an pdb file, all of the hydrogens for the whole structure are placed at the beginning or the end of the structure, which makes them difficult to be interpreted by other programs (babel, chimera, namd, etc). I am using Pymol 1.5.0.1. (I will be updating to 1.6 soon). Any suggestions for settings to change or a workaround (possibly involving other programs, if necessary), would be greatly appreciated. Thanks, Matt -- ------------------------------------------------------------------------------ Own the Future-Intel® Level Up Game Demo Contest 2013 Rise to greatness in Intel's independent game demo contest. Compete for recognition, cash, and the chance to get your game on Steam. $5K grand prize plus 10 genre and skill prizes. Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
