Pete,
thanks for suggestion.
I've tried to use loadDir with the pdb's subset where each file had name
like 001.pdb 002.pdb ... 055.pdb but when the sotring have been still wrong
:(
also is loadDir script I found block
for c in glob( g ):
cmd.load(c)
if ( group != None ):
cmd.group( group, basename(c).split(".")[0], "add" )
what should I change here to sort files correctly?
James
2013/4/2 Pete Meyer <pame...@mcw.edu>
> Hi James,
>
> Assuming your going from the pymol wiki loadDir script; you'd need to
> change glob(c) loop (sort the list in your preferred order before the loop,
> rather than using the result list unmodified).
>
> If I'm understanding your problem correctly (numbered pdb files being
> loaded as 1.pdb, 100.pdb, 2.pdb ... instead of 1.pdb, 2.pdb, ... 100.pdb)
> it might be easier rename your pdb files so that the default string sorting
> from glob matches the numerical order you want. Using the same example,
> the filenames would change to 001.pdb, 002.pdb, ... 100.pdb.
>
> Pete
>
> James Starlight wrote:
>
>> Dear PyMol users!
>>
>>
>> I've forced with the problem of the loading of the my structural ensemble
>> (pdb files of the protein listed as 1.pdb 2.pdb 3.pdb ..;. 100.pdb) into
>> pymol via loadDir.pml script. In particular after loading of my ensemble
>> in
>> the right contex pymol's window I want to preserve structural order
>> according to the pdb's names ( so that structures were listed in order
>> from
>> 1 to the 100.pdbs but not in the random (mixed) order). What additions to
>> the loadDir script should I do to make such ordering ?
>>
>>
>>
>> James
>>
>>
>>
>> ------------------------------**------------------------------**
>> ------------
>>
>> ------------------------------**------------------------------**
>> ------------------
>> Own the Future-Intel(R) Level Up Game Demo Contest 2013
>> Rise to greatness in Intel's independent game demo contest. Compete for
>> recognition, cash, and the chance to get your game on Steam. $5K grand
>> prize plus 10 genre and skill prizes. Submit your demo by 6/6/13.
>> http://altfarm.mediaplex.com/**ad/ck/12124-176961-30367-2<http://altfarm.mediaplex.com/ad/ck/12124-176961-30367-2>
>>
>>
>> ------------------------------**------------------------------**
>> ------------
>>
>> ______________________________**_________________
>> PyMOL-users mailing list
>> (PyMOL-users@lists.**sourceforge.net<PyMOL-users@lists.sourceforge.net>
>> )
>> Info Page:
>> https://lists.sourceforge.net/**lists/listinfo/pymol-users<https://lists.sourceforge.net/lists/listinfo/pymol-users>
>> Archives: http://www.mail-archive.com/**pymol-users@lists.sourceforge.**
>> net <http://www.mail-archive.com/pymol-users@lists.sourceforge.net>
>>
>
>
------------------------------------------------------------------------------
Minimize network downtime and maximize team effectiveness.
Reduce network management and security costs.Learn how to hire
the most talented Cisco Certified professionals. Visit the
Employer Resources Portal
http://www.cisco.com/web/learning/employer_resources/index.html
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
