Hi Gianluigi, I can only reproduce your problem with retain_order=1, not with retain_order=0 (which is the default). Could it be that in your pymolrc, you do "set retain_order, 1"?
I don't think there is a difference between 1.6 and previous versions. Cheers, Thomas Gianluigi Caltabiano wrote, On 07/23/13 09:48: > Hi all, > > Since 1.6.0.0 on my Mac (OSX 10.8.4) I am experiencing an annoying > behaviour both when creating a new object from two existing and when > mutating a residue via mutagenesis wizard (both with Macpymol and X11) > > Creating a new object from two existing, mess up the two (different) chains. > set retain_order, 1 does not change this behaviour. > > As for the new object creating try to reproduce this: > > fetch 4DAJ > create MA, 4DAJ and chain A > create MB, MA > alter MB, chain='B' > create dim, MA MB > > > The new object is not ordered on a chain basis, but on residue number. > > Something very similar happens using mutagenesis wizard, in that case it > mess the new residue with the first residue. In this cases closing PyMol > and reopening (or chainging to Hybrid) often, but not always, works. > Still is a pain in the back. > > Any clues? > > cheers, > > Gianluigi -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
