I have Debian Testing/Jessie installed in a VMware Player v-6.0 on my 64
bit Laptop as a testbed before installing apps on my native Linux
production computer.
I have installed the Debian package from the Jessie repository, but it
crashes when I try to open it. The run log is attached. If anyone has
encountered this problem I would appreciate some pointers towards a
solution.
Thinks in advance.
/usr/bin/pymol
PyMOL(TM) Molecular Graphics System, Version 1.6.0.0.
Copyright (c) Schrodinger, LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
PyMOL is user-supported open-source software. Although some versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing efforts to create open and affordable scientific
software by purchasing a PyMOL Maintenance and/or Support subscription.
More information can be found at "http://www.pymol.org";.
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
Detected OpenGL version 2.0 or greater. Shaders available.
Detected GLSL version 1.20.
OpenGL graphics engine:
GL_VENDOR: VMware, Inc.
GL_RENDERER: Gallium 0.4 on llvmpipe (LLVM 3.2, 256 bits)
GL_VERSION: 2.1 Mesa 9.1.6
Detected 4 CPU cores. Enabled multithreaded rendering.
HEADER COMPLEX (HYDROLASE/PEPTIDE) 01-AUG-96 1YTI
TITLE SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SIV PROTEASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: SIV PROTEINASE;
COMPND 5 EC: 3.4.23.16;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: PEPTIDE PRODUCT;
COMPND 10 CHAIN: I;
COMPND 11 ENGINEERED: YES
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 8 symmetry operators.
CmdLoad: "/home/computation/1yti.pdb" loaded as "1yti".
LLVM ERROR: Cannot select: 0x2938f10: i32 = fneg 0x2926800 [ID=456]
0x2926800: i32 = extract_vector_elt 0x291df80, 0x28ba120 [ID=448]
0x291df80: v4i32 = extract_subvector 0x29441a0, 0x292d870 [ID=440]
0x29441a0: v8i32 = X86ISD::VBROADCAST 0x292ed80 [ID=437]
0x292ed80: i32,ch = load 0x288d3f0, 0x28ad660, 0x288d7f0<LD4[%270]> [ORD=703] [ID=436]
0x28ad660: i64 = add 0x28ad970, 0x2907e90 [ORD=701] [ID=435]
0x28ad970: i64,ch = load 0x288d3f0, 0x28ab950, 0x288d7f0<LD8[%183]> [ORD=700] [ID=431]
0x28ab950: i64,ch = CopyFromReg 0x281f190, 0x28acf60 [ORD=608] [ID=151]
0x28acf60: i64 = Register %vreg52 [ORD=608] [ID=34]
0x288d7f0: i64 = undef [ORD=535] [ID=18]
0x2907e90: i64 = Constant<48> [ORD=629] [ID=38]
0x288d7f0: i64 = undef [ORD=535] [ID=18]
0x292d870: i64 = Constant<4> [ID=86]
0x28ba120: i32 = Constant<0> [ID=87]
In function: fs34_variant0_partial
pure virtual method called
terminate called without an active exception
Aborted
computation@inga:~$
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